Publications
Jeffares Group at the University of York
The website is under construction. Our previous website is here.
Summaries
Recent (2025-04-11)
Batista, Luís Fábio S., C. M. Sandoval Pacheco, Gabriela V. Araujo Flores, Frederico M. Ferreira, André N. A. Gonçalves, Wilfredo Sosa-Ochoa, V. D. da Matta, C. Gomes, Concepción Zúniga, C. P. Corbett, D. Jeffares, Helder I. Nakaya, Fernando T. Silveira, and M. Laurenti. 2025. Molecular Insights into Cell-Mediated Immunity in Atypical Non-Ulcerated Cutaneous Leishmaniasis. Microorganisms 13 (2). MDPI: 413. doi:10.3390/microorganisms13020413
Reis-Cunha, João Luís, and Daniel Charlton Jeffares. 2024. Detecting Complex Infections in Trypanosomatids Using Whole Genome Sequencing. BMC Genomics 25 (1). BioMed Central: 1011. doi:10.1186/s12864-024-10862-6
Thiam, Rokhaya, Maria Santana Ceballos, Tom Beneke, Nada Kuk, Grégoire Pasquier, Lucien Crobu, Daniel C. Jeffares, Baptiste Vergnes, Bridlin Barckmann, and Yvon Sterkers. 2025. A NovelLeishmania InfantumReference Strain for Gene Editing and the Study of Visceral Leishmaniasis. bioRxiv. doi:10.1101/2025.02.18.638795
Highly cited
Mourier, Tobias, and Daniel C. Jeffares. 2003. Eukaryotic Intron Loss. Science 300(5624):1393 doi:10.1126/science.1080559
Jeffares, Daniel C., Arnab Pain, Andrew Berry, Anthony V. Cox, James Stalker, Catherine E. Ingle, Alan Thomas, Michael A. Quail, Kyle Siebenthall, Anne-Catrin Uhlemann, Sue Kyes, Sanjeev Krishna, Chris Newbold, Emmanouil T. Dermitzakis, and Matthew Berriman. 2007. Genome Variation and Evolution of the Malaria Parasite Plasmodium Falciparum. Nature Genetics 39 (1). Nature Publishing Group US New York: 120–25. doi:10.1038/ng1931
Jeffares DC, Penkett CJ, Bähler J. Rapidly regulated genes are intron poor. Trends Genet. 2008 Aug;24(8):375–8. https://doi.org/10.1016/j.tig.2008.05.006
Jeffares, Daniel C., Charalampos Rallis, Adrien Rieux, Doug Speed, Martin Převorovský, Tobias Mourier, Francesc X. Marsellach, Zamin Iqbal, Winston Lau, Tammy M. K. Cheng, Rodrigo Pracana, Michael Mülleder, Jonathan L. D. Lawson, Anatole Chessel, Sendu Bala, Garrett Hellenthal, Brendan O’Fallon, Thomas Keane, Jared T. Simpson, Leanne Bischof, Bartlomiej Tomiczek, Danny A. Bitton, Theodora Sideri, Sandra Codlin, Josephine E. E. U. Hellberg, Laurent van Trigt, Linda Jeffery, Juan-Juan Li, Sophie Atkinson, Malte Thodberg, Melanie Febrer, Kirsten McLay, Nizar Drou, William Brown, Jacqueline Hayles, Rafael E. Carazo Salas, Markus Ralser, Nikolas Maniatis, David J. Balding, Francois Balloux, Richard Durbin, and Jürg Bähler. 2015. The Genomic and Phenotypic Diversity of Schizosaccharomyces Pombe. Nature Genetics 47 (3): 235–41. doi:10.1038/ng.3215
Jeffares DC, Jolly C, Hoti M, Speed D, Shaw L, Rallis C, Balloux F, Dessimoz C, Bähler J, Sedlazeck FJ. Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast. Nat Commun. 2017 Jan 24;8(1):14061. http://dx.doi.org/10.1038/ncomms14061